Derisi et al. Yeast
This dataset was constructed by integrating the Derisi et al. gene expression data for 5984 Yeast genes under 7 biological conditions and 111 annotations on these genes:
- The 7 gene expression measurements selected from Derisi et al. (1997) correspond to the expression measurements of 5984 Yeast genes during the diauxic shift process.
- The 111 gene annotations were extracted from 6 biological data sources: 15 GO terms, 16 KEGG pathways, 25 promoters, 20 interaction annotations, 15 phenotypes and 20 Pubmed IDs.
The resulting matrix contains 5984 lines (genes) and 118 columns (expression levels and annotations).
Data Files
File | Description |
Dataset description | Short description of the dataset. |
Derisi dataset | Data matrix of 5984 lines (genes) and 118 columns (gene expression levels and annotations). Each line contains expression profiles (discretized expression measurements) over the 7 biological conditions and at most 111 gene annotations (15 GO terms, 16 KEGG pathways, 25 promoters, 20 interaction annotations, 15 phenotypes and 20 Pubmed IDs). |
Reference
Co-expressed Gene Groups Analysis (CGGA): An automatic tool for the interpretation of microarray experiments, Ricardo Martinez, Nicolas Pasquier, Claude Pasquier, Martine Collard and Lucero Lopez-Perez, Journal of Integrative Bioinformatics, 3:2(1-12), 2006.
Experimental Results
The bi-clusters extracted from this dataset can be downloaded on the CGGA page.