Human–HIV-1 Protein Interactions
These datasets integrate data on Human proteins and HIV-1 proteins interactions. They are represented as data matrix in CSV format.
The first dataset contains only interaction data for 1433 human (rows) and 19 HIV-1 proteins (columns).
The second dataset integrates with human and HIV-1 protein interaction data the Gene Ontology biological annotations with TAS evidence code and Pubmed and Reactome related publication annotations for human proteins.
Data Files
| File | Description |
| Binary Interactions | Interaction data for 1433 human and 19 HIV-1 proteins. Human proteins are represented as rows and HIV-1 proteins are represented as columns. Each cell containing a "1" represents a positive interaction between corresponding human and HIV-1 proteins while values "?" correspond to cases where no interaction was reported. |
| Integrated interactions and annotations |
This dataset integrates with interaction data for the 1433 human and 19 HIV-1 proteins:
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| Interaction types | Data depicting interactions between 19 HIV-1 proteins and 1433 human proteins with directed interaction types. Examples of directed interaction types:
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Reference
Kartick Chandra Mondal, Nicolas Pasquier, Anirban Mukhopadhyay, Célia da Costa Pereira, Ujjwal Maulik, Andrea G. B. Tettamanzi. Prediction of Protein Interactions on HIV-1 - Human PPI Data Using a Novel Closure-Based Integrated Approach in Proceedings of the BIOINFORMATICS'2012 International Conference on Bioinformatics Models, Methods and Algorithms, pages 164-173, INSTICC, Vilamoura, Portugal, 1-4 february 2012, ISBN 978-989-8425-90-4