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Scientific Diffusion

Nicolas Robert, Fabien Gandon, Maxime Lefrançois

OLIVAW, Ontology Long-lived Integration Via Acimov Workflow, is a python framework for supporting agile ontology development. It is a tool that implements the ACIMOV methodology on GitHub relying on W3C Standards to assist all the steps of the lifecycle of modularised…

Anna Bobasheva, Franck Michel, Andon Tchechmedjiev, Anne Toulet

The ISSA pipeline was developed by the ISSA project (https://issa.cirad.fr/) . It orchestrates the automatic indexing of a scientific archive by extracting from the articles full-text thematic descriptors and named entities, and linking them with terminological resources in the…

Dominique Douguet, Frédéric Payan

SENSAAS is a shape-based alignment software which allows to superimpose molecules. It is based on the publication SenSaaS: Shape-based Alignment by Registration of Colored Point-based Surfaces ( https://doi.org/10.1002/minf.202000081).

Johann Mortara, Philippe Collet, Xhevahire Tërnava

In many variability-intensive systems, variability is implemented in code units provided by a host language, such as classes or functions, which do not align well with the domain features. Annotating or creating an orthogonal decomposition of code in terms of features implies…

Johann Mortara, Philippe Collet, Anne-Marie Dery-Pinna

Many large software systems are variability-rich, object-oriented, and implemented in a single code base. They then rely on multiple traditional techniques (inheritance, patterns) to realize variability, making these implementations not explicit. This directly hampers the…

Claude Pasquier, Vincent Guerlais, Denis Pallez

The identification of condition-specific gene sets from transcriptomic experiments is important to reveal regulatory and signaling mechanisms associated with a given cellular response. Statistical methods of differential expression analysis, designed to assess individual gene…